GDCM 3.2.1

ExplicitLittleEndian.cs
/*=========================================================================
Program: GDCM (Grassroots DICOM). A DICOM library
Copyright (c) 2006-2011 Mathieu Malaterre
All rights reserved.
See Copyright.txt or http://gdcm.sourceforge.net/Copyright.html for details.
This software is distributed WITHOUT ANY WARRANTY; without even
the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
PURPOSE. See the above copyright notice for more information.
=========================================================================*/
/*
* Simple C# example to show how one would 'Standardize' a DICOM File-Set
*
* Usage:
* $ export LD_LIBRARY_PATH=$HOME/Projects/gdcm/debug-gcc/bin
* $ mono bin/StandardizeFiles.exe input_path output_path
*/
using System;
using gdcm;
public class ExplicitLittleEndian
{
public static bool ToExplicitLittleEndian(string aSrc, string aDst)
{
using (ImageReader reader = new ImageReader())
{
bool b = System.IO.File.Exists(aSrc);
reader.SetFileName(aSrc);
if (!reader.Read())
{
throw new System.Exception(string.Format("Cannot read '{0}'", aSrc));
}
using (FileExplicitFilter fef = new FileExplicitFilter())
{
fef.SetChangePrivateTags(false);
fef.SetFile(reader.GetFile());
if (!fef.Change())
{
throw new System.Exception(string.Format("Cannot make explicit '{0}'", aSrc));
}
using (var syntax = new TransferSyntax(TransferSyntax.TSType.ExplicitVRLittleEndian))
{
using (ImageChangeTransferSyntax tsc = new ImageChangeTransferSyntax())
{
tsc.SetTransferSyntax(syntax);
tsc.SetInput(reader.GetImage());
tsc.SetForce(true);
if (!tsc.Change())
{
throw new System.Exception(string.Format("Cannot change '{0}'", aSrc));
}
using (var writer = new ImageWriter())
{
writer.SetFile(fef.GetFile());
writer.SetImage(tsc.GetOutput());
writer.SetFileName(aDst);
if (!writer.Write())
{
throw new System.Exception(string.Format("Cannot write to '{0}'", aDst));
}
}
}
}
}
}
return true;
}
public static int Main(string[] args)
{
gdcm.FileMetaInformation.SetSourceApplicationEntityTitle( "My Standardize App" );
// http://www.oid-info.com/get/1.3.6.1.4.17434
string THERALYS_ORG_ROOT = "1.3.6.1.4.17434";
gdcm.UIDGenerator.SetRoot( THERALYS_ORG_ROOT );
System.Console.WriteLine( "Root dir is now: " + gdcm.UIDGenerator.GetRoot() );
string dir1 = args[0];
string dir2 = args[1];
// Check input is valid:
if( !gdcm.PosixEmulation.FileIsDirectory(dir1) )
{
System.Console.WriteLine( "Input directory: " + dir1 + " does not exist. Sorry" );
return 1;
}
if( !gdcm.PosixEmulation.FileIsDirectory(dir2) )
{
System.Console.WriteLine( "Output directory: " + dir2 + " does not exist. Sorry" );
return 1;
}
Directory d = new Directory();
uint nfiles = d.Load( dir1, true );
if(nfiles == 0) return 1;
// Process all filenames:
FilenamesType filenames = d.GetFilenames();
for( uint i = 0; i < nfiles; ++i )
{
string filename = filenames[ (int)i ];
string outfilename = filename.Replace( dir1, dir2 );
System.Console.WriteLine( "Filename: " + filename );
System.Console.WriteLine( "Out Filename: " + outfilename );
if( !ToExplicitLittleEndian( filename, outfilename ) )
{
System.Console.WriteLine( "Could not process filename: " + filename );
//return 1;
}
}
return 0;
}
}
gdcm::BitmapToBitmapFilter::SetInput
void SetInput(const Bitmap &image)
Set input image.
gdcm::Directory
Class for manipulation directories.
Definition gdcmDirectory.h:43
gdcm::Directory::Load
unsigned int Load(FilenameType const &name, bool recursive=false)
gdcm::Directory::GetFilenames
FilenamesType const & GetFilenames() const
Set/Get the file names within the directory.
Definition gdcmDirectory.h:58
gdcm::FileExplicitFilter
FileExplicitFilter class.
Definition gdcmFileExplicitFilter.h:39
gdcm::FileExplicitFilter::SetChangePrivateTags
void SetChangePrivateTags(bool b)
Decide whether or not to VR'ify private tags.
Definition gdcmFileExplicitFilter.h:45
gdcm::FileExplicitFilter::GetFile
File & GetFile()
Definition gdcmFileExplicitFilter.h:61
gdcm::FileExplicitFilter::SetFile
void SetFile(const File &f)
Set/Get File.
Definition gdcmFileExplicitFilter.h:60
gdcm::FileExplicitFilter::Change
bool Change()
Set FMI Transfer Syntax.
gdcm::FileMetaInformation
Class to represent a File Meta Information.
Definition gdcmFileMetaInformation.h:41
gdcm::FileMetaInformation::SetSourceApplicationEntityTitle
static void SetSourceApplicationEntityTitle(const char *title)
gdcm::ImageChangeTransferSyntax
ImageChangeTransferSyntax class.
Definition gdcmImageChangeTransferSyntax.h:40
gdcm::ImageChangeTransferSyntax::SetTransferSyntax
void SetTransferSyntax(const TransferSyntax &ts)
Set target Transfer Syntax.
Definition gdcmImageChangeTransferSyntax.h:46
gdcm::ImageChangeTransferSyntax::Change
bool Change()
Change.
gdcm::ImageChangeTransferSyntax::SetForce
void SetForce(bool f)
Definition gdcmImageChangeTransferSyntax.h:61
gdcm::ImageReader
ImageReader.
Definition gdcmImageReader.h:34
gdcm::ImageReader::GetImage
const Image & GetImage() const
Return the read image.
gdcm::ImageReader::Read
bool Read() override
gdcm::ImageToImageFilter::GetOutput
const Image & GetOutput() const
Get Output image.
gdcm::ImageWriter
ImageWriter.
Definition gdcmImageWriter.h:33
gdcm::Reader::GetFile
const File & GetFile() const
Set/Get File.
Definition gdcmReader.h:72
gdcm::Reader::SetFileName
void SetFileName(const char *filename_native)
gdcm::System
Class to do system operation.
Definition gdcmSystem.h:27
gdcm::TransferSyntax
Class to manipulate Transfer Syntax.
Definition gdcmTransferSyntax.h:40
gdcm::TransferSyntax::TSType
TSType
Definition gdcmTransferSyntax.h:61
gdcm::UIDGenerator
Class for generating unique UID.
Definition gdcmUIDGenerator.h:28
gdcm::UIDGenerator::SetRoot
static void SetRoot(const char *root)
gdcm::UIDGenerator::GetRoot
static const char * GetRoot()
gdcm
Definition gdcmASN1.h:21